Mitochondria Research

Science Note

[Jun. 11, 2024]                                                                                                                                                                                                                            Previous Science Note
Mitochondrial Proteins for Maintaining of Organelle Homeostasis

Mitochondria are essential for maintaining lysosomal and autophagic homeostasis by providing the ATP required for lysosomal acidification and enzymatic function. They interact with lysosomes through signaling pathways and physical contacts, and coordinate the degradation and recycling of cellular components via autophagy. Efficient mitochondrial function supports the autophagic process by ensuring the removal of damaged organelles and proteins, thereby preventing cellular stress. Disruptions in mitochondrial activity can impair lysosomal function and autophagy, leading to the accumulation of cellular debris and compromised cellular homeostasis.

The mitochondrial intermembrane space protein mitofissin drives mitochondrial fission required for mitophagy
Click here for the original article: Tomoyuki Fukuda, et. al., Molecular Cell, 2023.

Mitochondrial protein C15ORF48 is a stress-independent inducer of autophagy that regulates oxidative stress and autoimmunity
Click here for the original article: Yuki Takakura, et. al., Nature Communications, 2024.

Cardiomyocyte-specific deletion of the mitochondrial transporter Abcb10 causes cardiac dysfunction via lysosomal-mediated ferroptosis
Click here for the original article: Yura Do, et. al., Bioscience Reports, 2024.

Point of Interest

-Mitofissin is a mitochondrial fission factor located in the mitochondrial intermembrane space that is required for receptor-mediated mitophagy.

-The mechanisms and roles of membrane fission by Atg44 differ from those of the known mitochondrial fission factors, the dynamin-related proteins Dnm1.

-Mitofissin-deficient cells cannot be enwrapped by the autophagosome precursor, the phagophore, due to the lack of mitochondrial fission. 

-Mitofissin binds directly to lipid membranes and induces lipid membrane fragility to facilitate membrane fission required for mitophagy.

Point of Interest

-Thymic epithelial cells (TECs) may use stress-independent autophagy to degrade self-protein for generation of self-antigen peptides.

-The mitochondrial protein C15ORF48 induced by inflammatory stimulation reduces mitochondrial membrane potential, decreases intracellular ATP levels, activates AMPK, and ultimately induces autophagy.

-Autophagy dependent on C15ORF48 increases intracellular glutathione levels and promotes cell survival by reducing oxidative stress. 

-C15orf48 deficient mice show a reduction in stress-independent autophagy, but not in typical starvation-induced autophagy.

-C15orf48 deficient mice develop autoimmunity, and furthermore, engraftment of C15orf48-deficient thymus into nude mice results in autoimmunity.

Point of Interest

-Abcb10 is a member of the ABC transporter superfamily located in the inner mitochondrial membrane and plays an important role in iron uptake into erythrocyte mitochondria..

-Cardiomyocyte-specific Abcb10 knockout mice show progressive worsening of cardiac fibrosis, increased cardiovascular risk markers and mitochondrial structural abnormalities.

-In addition, the mice exhibit increased Hif1α expression, decreased NAD synthase expression, reduced NAD+ levels and lysosomal dysfunction. 

-Impairment of Abcb10 leads to the accumulation of iron and lipid peroxides in lysosomes, resulting in ferroptosis and contributing to the development of chronic heart failure.

 

Related Techniques
           Mitophagy or autophagy detection Mitophagy Detection Kit, Autophagic Flux Assay Kit
           Mitochondrial superoxide detection MitoBright ROS Deep Red - Mitochondrial Superoxide Detection
           Mitochondrial membrane potential detection JC-1 MitoMP Detection KitMT-1 MitoMP Detection Kit
           Lysosomal function Lysosomal Acidic pH Detection Kit -Green/Red and Green/Deep Red
           Glutathione Quantification GSSG/GSH Quantification Kit
           Glycolysis/Oxidative phosphorylation Assay Glycolysis/OXPHOS Assay KitExtracellular OCR Plate Assay Kit
           Ferrous ion (Fe2+) detection FerroOrange (intracellular), Mito-FerroGreen (mitochondrial)
           Lipid peroxidation detection Liperfluo (intracellular), MitoPeDPP (mitochondrial)
           Cell Proliferation / Cytotoxicity Assay Cell Counting Kit-8Cytotoxicity LDH Assay Kit-WST
Related Applications

Lysosomal Function and Mitochondrial ROS

 

 

CCCP and Antimycin are recognized inducers of mitochondrial ROS, linked to the loss of mitochondrial membrane potential. Recent studies have shown that CCCP induces not only mitochondrial ROS but also lysosomal dysfunction. To observe mitochondrial ROS, HeLa cells were labeled with MitoBright ROS Deep Red for Mitochondrial Superoxide Detection, and the lysosomal mass and pH were independently detected with LysoPrime Green and pHLys Red. Co-staining with MitoBright ROS and Lysosomal dyes revealed that CCCP, unlike Antimycin, triggers concurrent lysosomal neutralization and mitochondrial ROS induction.

Reference: Benjamin S Padman, et. al., Autophagy (2013)

Products in Use
   - LysoPrime Green
   - pHLys Red
   - Lysosomal Acidic pH Detection Kit
   - MitoBright ROS - Mitochondrial Superoxide Detection

Co-staining of Lysosome and Mitophagy

 

 

We performed fluorescence imaging by stimulating mitophagy induction in SHSY-5Y cells stained with Mitophagy Detection(Code: MD01) and LysoPrime Green or existing products. The fluorescence signal of LysoPrime Green did not decrease and the lysosomal localization over time was confirmed. This means that the co-localization rate of the fluorescent spots of the Mtphagy Dye is higher than that of the existing product, and thus more accurate mitophagy analysis can be performed.

LysoPrime Green: Ex= 488 nm, Em= 500-570 nm
Mtphagy Dye: Ex= 561 nm, Em= 560-650 nm

Products in Use
   - LysoPrime Green
   - Mitophagy Detection Kit and Mtphagy Dye

 

Selection guide for mitochondria-related reagents

Mitochondria research is very multi-faceted, because the multi-functional organelle is not only involved in energy production in a cell, but other additional cellular functions. The active cycle of mitochondrial fusion and division induces morphological changes, which is called mitochondrial dynamics. Abnormalities in morphological control of mitochondria are associated with neurodegenerative diseases, metabolic disorders, aging, and so on. Therefore, the demand for long-term observation of mitochondrial dynamics has recently been increasing.

Selection Guide of Reagents

The following table lists reagents for mitochondrial research designed to stain and detect mitochondria (MitoBright LT, MitoTracker, etc.), mitochondrial membrane potential (JC-1, TMRM, TMRE, etc.), reactive oxygen species AKA ‘ROS’ (MitoBright ROS, MitoSOX, etc.), mitophagy, and lipid peroxides.

Mitophagy

Mitophagy
Reagent Mtphagy Dye Keima-Red
Principle Mtphagy Dye (included in Mitophagy Detection Kit) is a pH-sensitive fluorescent probe that accumulates in mitochondria and emits red fluorescence due to acidic conditions in a lysosome. A pH-sentitive ratiometric fluorescent protein. The excitation spectrum changes accoring to pH. This protein shows high fluorescence ratio (Ex. 550 nm/440 nm) values in a lysozome.
Fixed cell staining
Live-cell staining Yes Yes
Fixation after live-cell staining
Staining time > 30 min
Ex / Em 530 / 700 440, 550 / 620
Product code MD01MT02

Lipophilic peroxide / Singlet oxygen / Superoxide

  Lipophilic peroxide Singlet oxygen Superoxide Superoxide
Reagent MitoPeDPP Si-DMA MitoBright ROS Deep Red MitoSOX
Principle A cell-permeant fluorescent probe that accumulates in mitochondria and specifically reacts with lipophilic peroxides in mitochondria to emit fluorescence. A cell-permeant fluorescent probe that accumulates in mitochondria and specifically reacts with singlet oxigen generated in mitochondria to emit red fluorescence. A cell-permeant fluorescent probe that accumulates in mitochondria and reacts with superoxide generated in mitochondria to emit fluorescence. A cell-permeant fluorescent probe that accumulates in mitochondria and reacts with superoxide generated in mitochondria to emit red fluorescence.
Fixed cell staining
Live-cell staining Yes Yes Yes Yes
Fixation after live-cell staining
Staining time > 15 min > 45 min > 10 min > 10 min
Ex / Em 452 / 470 644 / 670 540 / 670 510 / 590
Product code M466 MT05 MT16

Membrane potential

Membrane potential
Reagent JC-1 MT-1 TMRM, TMRE
Principle A cell-permeant ratiometric fluorescent dye that accumulates in intact mitochondria due to the membrane potential. The excitation spectrum changes according to the mitochondria membrane potential. Cell-permeant fluorescent dyes that accumulate in intact mitochondria due to the membrane potential. MT-1 is extremely photostable and more sensitive than JC-1 and can provide equivalent detection sensitivity to TMRE. Cell-permeant fluorescent dyes that accumulate in intact mitochondria due to the membrane potential. Diffusion of the probes occurs in a damaged mitochondria that has the decreased membrane potential.
Fixed cell staining
Live-cell staining Yes Yes Yes
Fixation after live-cell staining Yes
Staining time 30-60 min 30 min 30-60 min
Ex / Em Monomer: 514 / 529
J-aggregation: 585/590
530-560 / 570-640 550 / 575
Product code MT09 MT13

Mitochondria staining

Mitochondria staining
Reagent MitoBright LT series MitoBright IM Red MitoTracker series Rhodamine 123
Principle Cell-permeant fluorescent dyes that accumulate in intact mitochondria due to the membrane potential. Cell-permeant fluorescent dyes that accumulate in intact mitochondria due to the membrane potential and covalently binds to proteins and other biomolecules. Cell-permeant fluorescent dyes that accumulate in intact mitochondria due to the membrane potential. Cell-permeant fluorescent dye that accumulates in intact mitochondria due to the membrane potential.
Fixed cell staining
Live-cell staining Yes Yes Yes Yes
Fixation after live-cell staining Yes Yes
Staining time 30 min 30 min 15-45 min > 15 min
Ex / Em 493 / 508, 547 / 563, 643 / 663 548 / 566 490 / 516 ~
644 / 665
507 / 529
Product code MT10, MT11,MT12 MT15 R233

Metal Ion Detection

   Iron ion (Fe2+) Calcium ion (Ca2+)
Reagent Mito-FerroGreen Rhod2-AM
Principle A cell-permeant fluorescent probe that accumulates in mitochondria and specifically reacts with ferrous ion in mitochondria to emit green fluorescence. A cell-permeant fluorescent probe that accumulates in mitochondria and specifically reacts with calcium ion in mitochondria to emit red fluorescence.
Fixed cell staining
Live-cell staining Yes Yes
Fixation after live-cell staining
Staining time 30 min 30-60 min
Ex / Em 505 / 535 553 / 576
Product code M489 R002 
Application Products
Mitophagy Detection Mitophagy Detection Kit
Mitochondrial Phospholipid Peroxidase Detection MitoPeDPP
Mitochondrial Ferrous Ion Detection Mito-FerroGreen
Mitochondrial Superoxide MitoBright ROS - Mitochondrial Superoxide Detection
Mitochondrial Singlet Oxygen Detection Si-DMA for Mitochondrial Singlet Oxygen Imaging
Mitochondrial Membrane Potential JC-1 MitoMP Detection Kit
MT-1 MitoMP Detection Kit
Mitochondria Staining MitoBright LT Green
MitoBright LT Red
MitoBright LT Deep Red
MitoBright IM Red for Immunostaining

Product Classification

Product Classification